Citing

While cuisto does not have a reference paper as of now, you can reference the GitHub repository.

Please make sure to cite all the softwares used in your research. Citations are usually the only metric used by funding agencies, so citing properly the tools used in your research ensures the continuation of those projects.

• Fiji : https://imagej.net/software/fiji/#publication
• QuPath : https://qupath.readthedocs.io/en/stable/docs/intro/citing.html
• ABBA : doi:10.1101/2024.09.06.611625
• Brainglobe :
  • AtlasAPI : https://brainglobe.info/documentation/brainglobe-atlasapi/index.html#citation
  • Brainrender : https://brainglobe.info/documentation/brainrender/index.html#citation
• Allen brain atlas (CCFv3) : doi:10.1016/j.cell.2020.04.007
• 3D Allen spinal cord atlas : doi:10.1016/j.crmeth.2021.100074
• Skeleton analysis (for fibers-like segmentation) : doi:10.7717/peerj.4312