qupath_script_runner
Template to show how to run groovy script with QuPath, multi-threaded.
EXCLUDE_LIST = []
module-attribute
#
Images names to NOT run the script on.
NTHREADS = 5
module-attribute
#
Number of threads to use.
QPROJ_PATH = '/path/to/qupath/project.qproj'
module-attribute
#
Full path to the QuPath project.
QUIET = True
module-attribute
#
Use QuPath in quiet mode, eg. with minimal verbosity.
QUPATH_EXE = '/path/to/the/qupath/QuPath-0.5.1 (console).exe'
module-attribute
#
Path to the QuPath executable (console mode).
SAVE = True
module-attribute
#
Whether to save the project after the script ran on an image.
SCRIPT_PATH = '/path/to/the/script.groovy'
module-attribute
#
Path to the groovy script.